Journal of Pathology Informatics Journal of Pathology Informatics
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Original Article: International telepathology consultation: Three years of experience between the University of Pittsburgh Medical Center and KingMed Diagnostics in China
Chengquan Zhao, Tao Wu, Xiangdong Ding, Anil V Parwani, Hualin Chen, Jeffrey McHugh, Anthony Piccoli, Qinling Xie, Gonzalo Romero Lauro, Xiaodong Feng, Douglas J Hartman, Raja R Seethala, Shangwei Wu, Samuel Yousem, Yaoming Liang, Liron Pantanowitz
J Pathol Inform 2015, 6:63 (27 November 2015)
DOI:10.4103/2153-3539.170650  PMID:26730353
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Technical Note: Extraction and analysis of discrete synoptic pathology report data using R
Alexander Boag
J Pathol Inform 2015, 6:62 (27 November 2015)
DOI:10.4103/2153-3539.170649  PMID:26730352
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Technical Note: General pathologist-helper: The new medical app about general pathology
Iván Fernandez-Vega
J Pathol Inform 2015, 6:61 (27 November 2015)
DOI:10.4103/2153-3539.170648  PMID:26730351
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Original Article: Prediction of primary breast cancer size and T-stage using micro-computed tomography in lumpectomy specimens
Wafa M Sarraj, Rong Tang, Anas L Najjar, Molly Griffin, Anthony H Bui, Alan Zambeli-Ljepovic, Mike Senter-Zapata, Maya Lewin-Berlin, Leopoldo Fernandez, Juliette Buckley, Amy Ly, Elena Brachtel, Owen Aftreth, John Gilbertson, Yukako Yagi, Michele Gadd, Kevin S Hughes, Barbara L Smith, James S Michaelson
J Pathol Inform 2015, 6:60 (27 November 2015)
DOI:10.4103/2153-3539.170647  PMID:26730350
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Research Article: Inclusion probability for DNA mixtures is a subjective one-sided match statistic unrelated to identification information Highly accessed article
Mark William Perlin
J Pathol Inform 2015, 6:59 (28 October 2015)
DOI:10.4103/2153-3539.168525  PMID:26605124
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Letter to Editor: Response to Rojo and Bueno: "Analysis of the impact of high resolution monitors in digital pathology"
Rebecca Randell, Roy A Ruddle, Rhys G Thomas, Darren Treanor
J Pathol Inform 2015, 6:58 (28 October 2015)
DOI:10.4103/2153-3539.168522  PMID:26605123
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Commentary: Analysis of the impact of high-resolution monitors in digital pathology
Marcial García Rojo, Gloria Bueno
J Pathol Inform 2015, 6:57 (28 October 2015)
PMID:26605122
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Research Article: Diagnostic performance on briefly presented digital pathology images
Joseph P Houghton, Bruce R Smoller, Niamh Leonard, Michael R Stevenson, Tim Dornan
J Pathol Inform 2015, 6:56 (28 October 2015)
DOI:10.4103/2153-3539.168517  PMID:26605121
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Research Article: Utility of telepathology as a consultation tool between an off-site surgical pathology suite and affiliated hospitals in the frozen section diagnosis of lung neoplasms
Taisia Vitkovski, Tawfiqul Bhuiya, Michael Esposito
J Pathol Inform 2015, 6:55 (28 October 2015)
DOI:10.4103/2153-3539.168515  PMID:26605120
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Technical Note: Cytopathology whole slide images and virtual microscopy adaptive tutorials: A software pilot
Simone L Van Es, Wendy M Pryor, Zack Belinson, Elizabeth L Salisbury, Gary M Velan
J Pathol Inform 2015, 6:54 (28 September 2015)
DOI:10.4103/2153-3539.166016  PMID:26605119
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Original Article: Rapid evaluation of fresh ex vivo kidney tissue with full-field optical coherence tomography
Manu Jain, Brian D Robinson, Bekheit Salamoon, Olivier Thouvenin, Claude Boccara, Sushmita Mukherjee
J Pathol Inform 2015, 6:53 (28 September 2015)
DOI:10.4103/2153-3539.166014  PMID:26605118
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Research Article: Working toward consensus among professionals in the identification of classical cervical cytomorphological characteristics in whole slide images
Odille Bongaerts, Paul J van Diest, Math Pieters, Marius Nap
J Pathol Inform 2015, 6:52 (28 September 2015)
DOI:10.4103/2153-3539.166013  PMID:26605117
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Research Article: Support patient search on pathology reports with interactive online learning based data extraction
Shuai Zheng, James J Lu, Christina Appin, Daniel Brat, Fusheng Wang
J Pathol Inform 2015, 6:51 (28 September 2015)
DOI:10.4103/2153-3539.166012  PMID:26605116
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Research Article: Practical considerations in genomic decision support: The eMERGE experience
Timothy M Herr, Suzette J Bielinski, Erwin Bottinger, Ariel Brautbar, Murray Brilliant, Christopher G Chute, Beth L Cobb, Joshua C Denny, Hakon Hakonarson, Andrea L Hartzler, George Hripcsak, Joseph Kannry, Isaac S Kohane, Iftikhar J Kullo, Simon Lin, Shannon Manzi, Keith Marsolo, Casey Lynnette Overby, Jyotishman Pathak, Peggy Peissig, Jill Pulley, James Ralston, Luke Rasmussen, Dan M Roden, Gerard Tromp, Timothy Uphoff, Chunhua Weng, Wendy Wolf, Marc S Williams, Justin Starren
J Pathol Inform 2015, 6:50 (28 September 2015)
DOI:10.4103/2153-3539.165999  PMID:26605115
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Original Article: Validation of whole slide imaging for frozen section diagnosis in surgical pathology
Thomas W Bauer, Renee J Slaw, Jesse K McKenney, Deepa T Patil
J Pathol Inform 2015, 6:49 (31 August 2015)
DOI:10.4103/2153-3539.163988  PMID:26430537
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Technical Note: TissueCypher: A systems biology approach to anatomic pathology Highly accessed article
Jeffrey W Prichard, Jon M Davison, Bruce B Campbell, Kathleen A Repa, Lia M Reese, Xuan M Nguyen, Jinhong Li, Tyler Foxwell, Lansing D Taylor, Rebecca J Critchley-Thorne
J Pathol Inform 2015, 6:48 (31 August 2015)
DOI:10.4103/2153-3539.163987  PMID:26430536
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Original Article: Whole slide image with image analysis of atypical bile duct brushing: Quantitative features predictive of malignancy
Brian T Collins, Cody R Weimholt
J Pathol Inform 2015, 6:47 (31 August 2015)
DOI:10.4103/2153-3539.163986  PMID:26430535
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Viewpoint: A conceptual model for translating omic data into clinical action
Timothy M Herr, Suzette J Bielinski, Erwin Bottinger, Ariel Brautbar, Murray Brilliant, Christopher G Chute, Joshua Denny, Robert R Freimuth, Andrea Hartzler, Joseph Kannry, Isaac S Kohane, Iftikhar J Kullo, Simon Lin, Jyotishman Pathak, Peggy Peissig, Jill Pulley, James Ralston, Luke Rasmussen, Dan Roden, Gerard Tromp, Marc S Williams, Justin Starren
J Pathol Inform 2015, 6:46 (31 August 2015)
DOI:10.4103/2153-3539.163985  PMID:26430534
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Technical Note: Use of a data warehouse at an academic medical center for clinical pathology quality improvement, education, and research
Matthew D Krasowski, Andy Schriever, Gagan Mathur, John L Blau, Stephanie L Stauffer, Bradley A Ford
J Pathol Inform 2015, 6:45 (28 July 2015)
DOI:10.4103/2153-3539.161615  PMID:26284156
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Technical Note: Smartphone applications: A contemporary resource for dermatopathology
Matthew G Hanna, Anil V Parwani, Liron Pantanowitz, Vinod Punjabi, Rajendra Singh
J Pathol Inform 2015, 6:44 (28 July 2015)
DOI:10.4103/2153-3539.161612  PMID:26284155
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Original Article: Investigation of scanning parameters for thyroid fine needle aspiration cytology specimens: A pilot study
Maheswari S Mukherjee, Amber D Donnelly, Elizabeth R Lyden, Whitney R Wedel, Mary F McGaughey, John J Baker, Stanley J Radio
J Pathol Inform 2015, 6:43 (28 July 2015)
DOI:10.4103/2153-3539.161610  PMID:26284154
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Commentary: Environmental components and methods for engaging pathology residents in informatics training
Christopher A Garcia, Jason M Baron, Bruce A Beckwith, Victor Brodsky, Anand S Dighe, Thomas M Gudewicz, Ji Yeon Kim, Veronica E Klepeis, William J Lane, Roy E Lee, Bruce P Levy, Michael A Mahowald, Diana Mandelker, David S McClintock, Andrew M Quinn, Luigi K Rao, Gregory M Riedlinger, Joseph Rudolf, John R Gilbertson
J Pathol Inform 2015, 6:42 (29 June 2015)
PMID:26167386
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Original Article: Content-based image retrieval of digitized histopathology in boosted spectrally embedded spaces
Akshay Sridhar, Scott Doyle, Anant Madabhushi
J Pathol Inform 2015, 6:41 (29 June 2015)
DOI:10.4103/2153-3539.159441  PMID:26167385
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Original Article: Development of a semi-automated method for subspecialty case distribution and prediction of intraoperative consultations in surgical pathology
Raul S Gonzalez, Daniel Long, Omar Hameed
J Pathol Inform 2015, 6:40 (29 June 2015)
DOI:10.4103/2153-3539.159439  PMID:26167384
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Research Article: Automated image based prominent nucleoli detection
Choon K Yap, Emarene M Kalaw, Malay Singh, Kian T Chong, Danilo M Giron, Chao-Hui Huang, Li Cheng, Yan N Law, Hwee Kuan Lee
J Pathol Inform 2015, 6:39 (23 June 2015)
DOI:10.4103/2153-3539.159232  PMID:26167383
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Research Article: Validation of natural language processing to extract breast cancer pathology procedures and results
Arika E Wieneke, Erin J. A. Bowles, David Cronkite, Karen J Wernli, Hongyuan Gao, David Carrell, Diana S. M. Buist
J Pathol Inform 2015, 6:38 (23 June 2015)
DOI:10.4103/2153-3539.159215  PMID:26167382
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Original Article: Biomedical imaging ontologies: A survey and proposal for future work
Barry Smith, Sivaram Arabandi, Mathias Brochhausen, Michael Calhoun, Paolo Ciccarese, Scott Doyle, Bernard Gibaud, Ilya Goldberg, Charles E Kahn, James Overton, John Tomaszewski, Metin Gurcan
J Pathol Inform 2015, 6:37 (23 June 2015)
DOI:10.4103/2153-3539.159214  PMID:26167381
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Technical Note: HPASubC: A suite of tools for user subclassification of human protein atlas tissue images
Toby C Cornish, Aravinda Chakravarti, Ashish Kapoor, Marc K Halushka
J Pathol Inform 2015, 6:36 (23 June 2015)
DOI:10.4103/2153-3539.159213  PMID:26167380
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Research Article: Evaluation of a smartphone for telepathology: Lessons learned
Paul Fontelo, Fang Liu, Yukako Yagi
J Pathol Inform 2015, 6:35 (23 June 2015)
DOI:10.4103/2153-3539.158912  PMID:26167379
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Original Article: Support system for pathologists and researchers
Takumi Ishikawa, Junko Takahashi, Mai Kasai, Takayuki Shiina, Yuka Iijima, Hiroshi Takemura, Hiroshi Mizoguchi, Takeshi Kuwata
J Pathol Inform 2015, 6:34 (23 June 2015)
DOI:10.4103/2153-3539.158911  PMID:26167378
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Research Article: An optimized color transformation for the analysis of digital images of hematoxylin & eosin stained slides
Mark D Zarella, David E Breen, Andrei Plagov, Fernando U Garcia
J Pathol Inform 2015, 6:33 (23 June 2015)
DOI:10.4103/2153-3539.158910  PMID:26167377
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Original Article: The need for informatics to support forensic pathology and death investigation
Bruce Levy
J Pathol Inform 2015, 6:32 (23 June 2015)
DOI:10.4103/2153-3539.158907  PMID:26167376
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Symposium – International Academy of Digital Pathology (IADP): Comparative study between quantitative digital image analysis and fluorescence in situ hybridization of breast cancer equivocal human epidermal growth factor receptors 2 score 2 + cases
Essam Ayad, Mina Mansy, Dalal Elwi, Mostafa Salem, Mohamed Salama, Klaus Kayser
J Pathol Inform 2015, 6:31 (3 June 2015)
DOI:10.4103/2153-3539.158066  PMID:26110098
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Symposium – International Academy of Digital Pathology (IADP): The use of virtual microscopy and a wiki in pathology education: Tracking student use, involvement, and response
Zev Leifer
J Pathol Inform 2015, 6:30 (3 June 2015)
DOI:10.4103/2153-3539.158063  PMID:26110097
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Symposium – International Academy of Digital Pathology (IADP): A perspective on digital and computational pathology
Bhagavathi Ramamurthy, Frederick D Coffman, Stanley Cohen
J Pathol Inform 2015, 6:29 (3 June 2015)
DOI:10.4103/2153-3539.158059  PMID:26110096
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Symposium – International Academy of Digital Pathology (IADP): Exploring viewing behavior data from whole slide images to predict correctness of students' answers during practical exams in oral pathology
Slawomir Walkowski, Mikael Lundin, Janusz Szymas, Johan Lundin
J Pathol Inform 2015, 6:28 (3 June 2015)
DOI:10.4103/2153-3539.158057  PMID:26110095
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Symposium – International Academy of Digital Pathology (IADP): Understanding the three-dimensional world from two-dimensional immunofluorescent adjacent sections
Sho Fujisawa, Dmitry Yarilin, Ning Fan, Mesruh Turkekul, Ke Xu, Afsar Barlas, Katia Manova-Todorova
J Pathol Inform 2015, 6:27 (3 June 2015)
DOI:10.4103/2153-3539.158052  PMID:26110094
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Symposium – International Academy of Digital Pathology (IADP): Enhancing automatic classification of hepatocellular carcinoma images through image masking, tissue changes and trabecular features
Maulana Abdul Aziz, Hiroshi Kanazawa, Yuri Murakami, Fumikazu Kimura, Masahiro Yamaguchi, Tomoharu Kiyuna, Yoshiko Yamashita, Akira Saito, Masahiro Ishikawa, Naoki Kobayashi, Tokiya Abe, Akinori Hashiguchi, Michiie Sakamoto
J Pathol Inform 2015, 6:26 (3 June 2015)
DOI:10.4103/2153-3539.158044  PMID:26110093
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Symposium – International Academy of Digital Pathology (IADP): Reimagining the microscope in the 21 st century using the scalable adaptive graphics environment
Victor Mateevitsi, Tushar Patel, Jason Leigh, Bruce Levy
J Pathol Inform 2015, 6:25 (3 June 2015)
DOI:10.4103/2153-3539.158042  PMID:26110092
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Abstract: Abstracts: Pathology Informatics 2015 Highly accessed article

J Pathol Inform 2015, 6:24 (2 June 2015)
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Review Article: A review of the current state of digital plate reading of cultures in clinical microbiology
Daniel D Rhoads, Susan M Novak, Liron Pantanowitz
J Pathol Inform 2015, 6:23 (28 May 2015)
DOI:10.4103/2153-3539.157789  PMID:26110091
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Original Article: Whole slide imaging for human epidermal growth factor receptor 2 immunohistochemistry interpretation: Accuracy, Precision, and reproducibility studies for digital manual and paired glass slide manual interpretation
David C Wilbur, Elena F Brachtel, John R Gilbertson, Nicholas C Jones, John G Vallone, Savitra Krishnamurthy
J Pathol Inform 2015, 6:22 (28 May 2015)
DOI:10.4103/2153-3539.157788  PMID:26110090
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Original Article: Prospector: A web-based tool for rapid acquisition of gold standard data for pathology research and image analysis
Alexander I Wright, Derek R Magee, Philip Quirke, Darren E Treanor
J Pathol Inform 2015, 6:21 (28 May 2015)
DOI:10.4103/2153-3539.157785  PMID:26110089
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Original Article: Automated morphometry provides accurate and reproducible virtual staging of liver fibrosis in chronic hepatitis C
Paul Calès, Julien Chaigneau, Gilles Hunault, Sophie Michalak, Christine Cavaro-Menard, Jean-Baptiste Fasquel, Sandrine Bertrais, Marie-Christine Rousselet
J Pathol Inform 2015, 6:20 (28 May 2015)
DOI:10.4103/2153-3539.157782  PMID:26110088
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Original Article: Rapid on-site evaluation with dynamic telecytopathology for ultrasound-guided fine-needle aspiration of head and neck nonthyroid lesions
Kamal K Khurana, Weisheng Xu, Dongliang Wang, Amar Swarnkar
J Pathol Inform 2015, 6:19 (28 May 2015)
DOI:10.4103/2153-3539.157781  PMID:26110087
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Original Article: Distance reporting in digital pathology: A study on 950 cases
Aleksandar Vodovnik
J Pathol Inform 2015, 6:18 (30 April 2015)
DOI:10.4103/2153-3539.156168  PMID:25969793
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Technical Note: Imaging file management to support international telepathology
Liron Pantanowitz, Jeffrey McHugh, William Cable, Chengquan Zhao, Anil V Parwani
J Pathol Inform 2015, 6:17 (24 March 2015)
DOI:10.4103/2153-3539.153917  PMID:25838969
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Research Article: Default settings of computerized physician order entry system order sets drive ordering habits
Jordan Olson, Christopher Hollenbeak, Keri Donaldson, Thomas Abendroth, William Castellani
J Pathol Inform 2015, 6:16 (24 March 2015)
DOI:10.4103/2153-3539.153916  PMID:25838968
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Research Article: Automated discrimination of lower and higher grade gliomas based on histopathological image analysis
Hojjat Seyed Mousavi, Vishal Monga, Ganesh Rao, Arvind U. K. Rao
J Pathol Inform 2015, 6:15 (24 March 2015)
DOI:10.4103/2153-3539.153914  PMID:25838967
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Commentary: Telecytopathology facilitates the use of rapid on-site evaluation in endoscopic ultraound fine needle aspiration of the pancreas to improve patient outcomes
Brian T Collins
J Pathol Inform 2015, 6:14 (24 March 2015)
PMID:25838966
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Editorial: 2014 American Telemedicine Association clinical guidelines for telepathology: Another important step in support of increased adoption of telepathology for patient care
Andrew J Evans, Elizabeth A Krupinski, Ronald S Weinstein, Liron Pantanowitz
J Pathol Inform 2015, 6:13 (24 March 2015)
DOI:10.4103/2153-3539.153906  PMID:25838965
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Book Review: Review of "digital pathology" by Yves Sucaet and Wim Waelput
John H Sinard
J Pathol Inform 2015, 6:12 (24 February 2015)
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Original Article: Performance of the CellaVision ® DM96 system for detecting red blood cell morphologic abnormalities
Christopher L Horn, Adnan Mansoor, Brenda Wood, Heather Nelson, Diane Higa, Lik Hang Lee, Christopher Naugler
J Pathol Inform 2015, 6:11 (24 February 2015)
DOI:10.4103/2153-3539.151922  PMID:25774322
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Original Article: A bayesian approach to laboratory utilization management
Ronald G Hauser, Brian R Jackson, Brian H Shirts
J Pathol Inform 2015, 6:10 (24 February 2015)
DOI:10.4103/2153-3539.151921  PMID:25774321
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Original Article: Clinical laboratory analytics: Challenges and promise for an emerging discipline
Brian H Shirts, Brian R Jackson, Geoffrey S Baird, Jason M Baron, Bryan Clements, Ricky Grisson, Ronald George Hauser, Julie R Taylor, Enrique Terrazas, Brad Brimhall
J Pathol Inform 2015, 6:9 (24 February 2015)
DOI:10.4103/2153-3539.151919  PMID:25774320
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Symposium - 2nd Nordic Symposium on Digital Pathology: RandomSpot: A web-based tool for systematic random sampling of virtual slides
Alexander I Wright, Heike I Grabsch, Darren E Treanor
J Pathol Inform 2015, 6:8 (24 February 2015)
DOI:10.4103/2153-3539.151906  PMID:25774319
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Symposium - 2nd Nordic Symposium on Digital Pathology: A comparative study of input devices for digital slide navigation
Jesper Molin, Claes Lundström, Morten Fjeld
J Pathol Inform 2015, 6:7 (24 February 2015)
DOI:10.4103/2153-3539.151894  PMID:25774318
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Symposium - 2nd Nordic Symposium on Digital Pathology: Histopathology in 3D: From three-dimensional reconstruction to multi-stain and multi-modal analysis
Derek Magee, Yi Song, Stephen Gilbert, Nicholas Roberts, Nagitha Wijayathunga, Ruth Wilcox, Andrew Bulpitt, Darren Treanor
J Pathol Inform 2015, 6:6 (24 February 2015)
DOI:10.4103/2153-3539.151890  PMID:25774317
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Symposium - 2nd Nordic Symposium on Digital Pathology: Summary of 2 nd Nordic symposium on digital pathology
Claes Lundström, Sten Thorstenson, Marie Waltersson, Anders Persson, Darren Treanor
J Pathol Inform 2015, 6:5 (24 February 2015)
DOI:10.4103/2153-3539.151889  PMID:25774316
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Commentary: Evaluating whole slide imaging: A working group opportunity
Darren Treanor, Brandon D Gallas, Marios A Gavrielides, Stephen M Hewitt
J Pathol Inform 2015, 6:4 (24 February 2015)
PMID:25774315
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Technical Note: Reqscan: An open source solution for laboratory requisition scanning, archiving and retrieval
Eviatar Bach, Daniel T Holmes
J Pathol Inform 2015, 6:3 (29 January 2015)
DOI:10.4103/2153-3539.150256  PMID:25722943
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Technical Note: Development and validation of an app-based cell counter for use in the clinical laboratory setting
Alexander C Thurman, Jessica L Davis, Max Jan, Charles E McCulloch, Benjamin D Buelow
J Pathol Inform 2015, 6:2 (29 January 2015)
DOI:10.4103/2153-3539.150252  PMID:25722942
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Research Article: Virtual microscopy in the undergraduate teaching of pathology
Oriol Ordi, Josep Antoni Bombí, Antonio Martínez, Josep Ramírez, Llúcia Alòs, Adela Saco, Teresa Ribalta, Pedro L Fernández, Elias Campo, Jaume Ordi
J Pathol Inform 2015, 6:1 (29 January 2015)
DOI:10.4103/2153-3539.150246  PMID:25722941
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