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Review Article: Current state of the regulatory trajectory for whole slide imaging devices in the USA
Esther Abels, Liron Pantanowitz
J Pathol Inform 2017, 8:23 (15 May 2017)
DOI:10.4103/jpi.jpi_11_17  
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Book Review: Review of “Travels on conferences: Evolution of digital pathology” by Klaus Kayser
Gabor Fischer
J Pathol Inform 2017, 8:22 (15 May 2017)
DOI:10.4103/jpi.jpi_6_17  
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Research Article: Training nuclei detection algorithms with simple annotations
Henning Kost, André Homeyer, Jesper Molin, Claes Lundström, Horst Karl Hahn
J Pathol Inform 2017, 8:21 (15 May 2017)
DOI:10.4103/jpi.jpi_3_17  
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PV16 Abstracts: Abstracts

J Pathol Inform 2017, 8:20 (10 May 2017)
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Technical Note: The need for careful data collection for pattern recognition in digital pathology
Raphaël Marée
J Pathol Inform 2017, 8:19 (10 April 2017)
DOI:10.4103/jpi.jpi_94_16  
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Original Article: Alchemy: A web 2.0 real-time quality assurance platform for human immunodeficiency Virus, hepatitis C Virus, and BK Virus quantitation assays
Emmanuel Agosto-Arroyo, Gina M Coshatt, Thomas S Winokur, Shuko Harada, Seung L Park
J Pathol Inform 2017, 8:18 (10 April 2017)
DOI:10.4103/jpi.jpi_69_16  
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Letter to Editor: Compromising the security of “Generating unique identifiers from patient identification data using security models”
Arran Schlosberg
J Pathol Inform 2017, 8:17 (10 April 2017)
DOI:10.4103/jpi.jpi_1_17  
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Technical Note: Evaluation of android smartphones for telepathology
Donald Ekong, Fang Liu, G Thomas Brown, Arunima Ghosh, Paul Fontelo
J Pathol Inform 2017, 8:16 (10 April 2017)
DOI:10.4103/jpi.jpi_93_16  
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Original Article: Predictive nuclear chromatin characteristics of melanoma and dysplastic nevi
Matthew G Hanna, Chi Liu, Gustavo K Rohde, Rajendra Singh
J Pathol Inform 2017, 8:15 (10 April 2017)
DOI:10.4103/jpi.jpi_84_16  
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Commentary: Making pathology diagnoses with glass or digital slides: Which modality is inferior?
Jonhan Ho, Liron Pantanowitz
J Pathol Inform 2017, 8:14 (10 April 2017)
DOI:10.4103/jpi.jpi_10_17  
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Original Article: Performance of a web-based method for generating synoptic reports
Megan A Renshaw, Scott A Renshaw, Mercy Mena-Allauca, Patricia P Carrion, Xiaorong Mei, Arniris Narciandi, Edwin W Gould, Andrew A Renshaw
J Pathol Inform 2017, 8:13 (10 March 2017)
DOI:10.4103/jpi.jpi_91_16  
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Research Article: A randomized study comparing digital imaging to traditional glass slide microscopy for breast biopsy and cancer diagnosis
Joann G Elmore, Gary M Longton, Margaret S Pepe, Patricia A Carney, Heidi D Nelson, Kimberly H Allison, Berta M Geller, Tracy Onega, Anna N. A Tosteson, Ezgi Mercan, Linda G Shapiro, Tad T Brunyé, Thomas R Morgan, Donald L Weaver
J Pathol Inform 2017, 8:12 (10 March 2017)
DOI:10.4103/2153-3539.201920  
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Technical Note: Turning microscopy in the medical curriculum digital: Experiences from the faculty of health and medical sciences at University of Copenhagen
Ben Vainer, Niels Werner Mortensen, Steen Seier Poulsen, Allan Have Sørensen, Jørgen Olsen, Hans Henrik Saxild, Flemming Fryd Johansen
J Pathol Inform 2017, 8:11 (10 March 2017)
DOI:10.4103/2153-3539.201919  
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Original Article: RecutClub.com: An open source, whole slide image-based pathology education system
Paul A Christensen, Nathan E Lee, Michael J Thrall, Suzanne Z Powell, Patricia Chevez-Barrios, S Wesley Long
J Pathol Inform 2017, 8:10 (10 March 2017)
DOI:10.4103/jpi.jpi_72_16  
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Original Article: Identification of histological correlates of overall survival in lower grade gliomas using a bag-of-words paradigm: A preliminary analysis based on hematoxylin & eosin stained slides from the lower grade glioma cohort of the cancer genome Atlas
Reid Trenton Powell, Adriana Olar, Shivali Narang, Ganesh Rao, Erik Sulman, Gregory N Fuller, Arvind Rao
J Pathol Inform 2017, 8:9 (10 March 2017)
DOI:10.4103/jpi.jpi_43_16  
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Symposium: Summary of the 4th nordic symposium on digital pathology
Claes Lundström, Marie Waltersson, Anders Persson, Darren Treanor
J Pathol Inform 2017, 8:8 (10 March 2017)
DOI:10.4103/jpi.jpi_5_17  
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Technical Note: Open-source software for demand forecasting of clinical laboratory test volumes using time-series analysis
Emad A Mohammed, Christopher Naugler
J Pathol Inform 2017, 8:7 (28 February 2017)
DOI:10.4103/jpi.jpi_65_16  
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Original Article: WhatsApp for teaching pathology postgraduates: a pilot study
Aditi Goyal, Nadeem Tanveer, Pooja Sharma
J Pathol Inform 2017, 8:6 (28 February 2017)
DOI:10.4103/2153-3539.201111  
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Research Article: Pathological diagnosis of gastric cancers with a novel computerized analysis system
Kosuke Oikawa, Akira Saito, Tomoharu Kiyuna, Hans Peter Graf, Eric Cosatto, Masahiko Kuroda
J Pathol Inform 2017, 8:5 (28 February 2017)
DOI:10.4103/2153-3539.201114  
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Original Article: Criteria to screen molecular tests for the diagnosis of herpes simplex virus in the central nervous system have no propensity to harm
Ronald George Hauser, Cynthia A Brandt, Richard A Martinello
J Pathol Inform 2017, 8:4 (28 February 2017)
DOI:10.4103/2153-3539.201113  
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Technical Note: Implementation of a software application for presurgical case history review of frozen section pathology cases
Andrew P Norgan, Mathew L Okeson, Justin E Juskewitch, Kabeer K Shah, William R Sukov
J Pathol Inform 2017, 8:3 (28 February 2017)
DOI:10.4103/2153-3539.201112  
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Editorial: Computer science, biology and biomedical informatics academy: outcomes from 5 years of immersing high-school students into informatics research
Andrew J King, Arielle M Fisher, Michael J Becich, David N Boone
J Pathol Inform 2017, 8:2 (28 February 2017)
DOI:10.4103/2153-3539.201110  
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Original Article: Classifications of multispectral colorectal cancer tissues using convolution neural network
Hawraa Haj-Hassan, Ahmad Chaddad, Youssef Harkouss, Christian Desrosiers, Matthew Toews, Camel Tanougast
J Pathol Inform 2017, 8:1 (28 February 2017)
DOI:10.4103/jpi.jpi_47_16  
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Original Article: A quantitative approach to evaluate image quality of whole slide imaging scanners
Prarthana Shrestha, R Kneepkens, J Vrijnsen, D Vossen, E Abels, B Hulsken
J Pathol Inform 2016, 7:56 (30 December 2016)
DOI:10.4103/2153-3539.197205  
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Technical Note: Software: Generating unique IDs from patient identification data using security models
Emad A Mohammed, Jonathan C Slack, Christopher T Naugler
J Pathol Inform 2016, 7:55 (30 December 2016)
DOI:10.4103/2153-3539.197203  
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Original Article: Reporting Gleason grade/score in synoptic reports of radical prostatectomies
Andrew A Renshaw, Mercy Mena-Allauca, Edwin W Gould
J Pathol Inform 2016, 7:54 (30 December 2016)
DOI:10.4103/2153-3539.197201  
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Technical Note: Use of application containers and workflows for genomic data analysis
Wade L Schulz, Thomas Durant, Alexa J Siddon, Richard Torres
J Pathol Inform 2016, 7:53 (30 December 2016)
DOI:10.4103/2153-3539.197197  
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Book Review: Review of "Digital Pathology Resource Guide, Version 6.0 Issue No. 1, 2016" by College of American Pathologists Digital Pathology Committee
Julie Diane Gibbs, Marilyn M Bui
J Pathol Inform 2016, 7:52 (30 December 2016)
DOI:10.4103/2153-3539.197196  
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Original Research: Enhancements in localized classification for uterine cervical cancer digital histology image assessment
Peng Guo, Haidar Almubarak, Koyel Banerjee, R Joe Stanley, Rodney Long, Sameer Antani, George Thoma, Rosemary Zuna, Shelliane R Frazier, Randy H Moss, William V Stoecker
J Pathol Inform 2016, 7:51 (30 December 2016)
DOI:10.4103/2153-3539.197193  
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Original Article: How to interpret the results of medical time series data analysis: Classical statistical approaches versus dynamic Bayesian network modeling
Agnieszka Onisko, Marek J Druzdzel, R Marshall Austin
J Pathol Inform 2016, 7:50 (30 December 2016)
DOI:10.4103/2153-3539.197191  
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Original Article: A multisite validation of whole slide imaging for primary diagnosis using standardized data collection and analysis
Katy Wack, Laura Drogowski, Murray Treloar, Andrew Evans, Jonhan Ho, Anil Parwani, Michael C Montalto
J Pathol Inform 2016, 7:49 (29 November 2016)
DOI:10.4103/2153-3539.194841  PMID:27994941
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Original Research Article: Reflex test reminders in required cancer synoptic templates decrease order entry error: An analysis of mismatch repair immunohistochemical orders to screen for Lynch syndrome
Mark R Kilgore, Carrie A McIlwain, Rodney A Schmidt, Barbara M Norquist, Elizabeth M Swisher, Rochelle L Garcia, Mara H Rendi
J Pathol Inform 2016, 7:48 (29 November 2016)
DOI:10.4103/2153-3539.194840  PMID:27994940
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Original Article: Pointwise mutual information quantifies intratumor heterogeneity in tissue sections labeled with multiple fluorescent biomarkers
Daniel M Spagnolo, Rekha Gyanchandani, Yousef Al-Kofahi, Andrew M Stern, Timothy R Lezon, Albert Gough, Dan E Meyer, Fiona Ginty, Brion Sarachan, Jeffrey Fine, Adrian V Lee, D Lansing Taylor, S Chakra Chennubhotla
J Pathol Inform 2016, 7:47 (29 November 2016)
DOI:10.4103/2153-3539.194839  PMID:27994939
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Original Article: The utility of including pathology reports in improving the computational identification of patients
Wei Chen, Yungui Huang, Brendan Boyle, Simon Lin
J Pathol Inform 2016, 7:46 (29 November 2016)
DOI:10.4103/2153-3539.194838  PMID:27994938
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Technical Note: The growing need for microservices in bioinformatics
Christopher L Williams, Jeffrey C Sica, Robert T Killen, Ulysses G. J. Balis
J Pathol Inform 2016, 7:45 (29 November 2016)
DOI:10.4103/2153-3539.194835  PMID:27994937
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Technical Note: Pathology report data extraction from relational database using R, with extraction from reports on melanoma of skin as an example
Jay J Ye
J Pathol Inform 2016, 7:44 (21 October 2016)
DOI:10.4103/2153-3539.192822  PMID:28066684
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Review Article: Computer-based image analysis in breast pathology
Ziba Gandomkar, Patrick C Brennan, Claudia Mello-Thoms
J Pathol Inform 2016, 7:43 (21 October 2016)
DOI:10.4103/2153-3539.192814  PMID:28066683
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Original Article: Detecting and segmenting cell nuclei in two-dimensional microscopy images
Chi Liu, Fei Shang, John A Ozolek, Gustavo K Rohde
J Pathol Inform 2016, 7:42 (21 October 2016)
DOI:10.4103/2153-3539.192810  PMID:28066682
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Erratum: Erratum: Antibody supervised deep learning for quantification of tumor infiltrating immune cells in hematoxylin and eosin stained breast cancer samples

J Pathol Inform 2016, 7:41 (28 September 2016)
DOI:10.4103/2153-3539.191031  PMID:27761297
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Original Article: Rates of provision of clinical information in the skin biopsy requisition form and corresponding encounter visit note
Meredith A Olson, Christine M Lohse, Nneka I Comfere
J Pathol Inform 2016, 7:40 (1 September 2016)
DOI:10.4103/2153-3539.189705  PMID:27688931
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Letter to Editor: A novel leadership fellowship in digital pathology
Bethany Jill Williams, Darren Treanor
J Pathol Inform 2016, 7:39 (1 September 2016)
DOI:10.4103/2153-3539.189704  PMID:27688930
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Research Article: Antibody-supervised deep learning for quantification of tumor-infiltrating immune cells in hematoxylin and eosin stained breast cancer samples
Riku Turkki, Nina Linder, Panu E Kovanen, Teijo Pellinen, Johan Lundin
J Pathol Inform 2016, 7:38 (1 September 2016)
DOI:10.4103/2153-3539.189703  PMID:27688929
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Technical Note: Experience of maintaining laboratory educational website's sustainability
Izak B Dimenstein
J Pathol Inform 2016, 7:37 (1 September 2016)
DOI:10.4103/2153-3539.189702  PMID:27688928
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Technical Note: A novel method for morphological pleomorphism and heterogeneity quantitative measurement: Named cell feature level co-occurrence matrix
Akira Saito, Yasushi Numata, Takuya Hamada, Tomoyoshi Horisawa, Eric Cosatto, Hans-Peter Graf, Masahiko Kuroda, Yoichiro Yamamoto
J Pathol Inform 2016, 7:36 (1 September 2016)
DOI:10.4103/2153-3539.189699  PMID:27688927
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Editorial: The coming paradigm shift: A transition from manual to automated microscopy
Navid Farahani, Corey E Monteith
J Pathol Inform 2016, 7:35 (1 September 2016)
DOI:10.4103/2153-3539.189698  PMID:27688926
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Book Review: Book review on "digital pathology": Historical perspectives, current concepts, & future applications
Paul J van Diest
J Pathol Inform 2016, 7:34 (23 August 2016)
DOI:10.4103/2153-3539.188944  
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Abstracts: Pathology Informatics Summit 2016 Highly accessed article
Jeremy Molligan, Robert Stapp, Miraj Patel, Jack London, Chirayu Goswami, James Evans, Stephen Peiper
J Pathol Inform 2016, 7:33 (28 July 2016)
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Research Article: Improving the creation and reporting of structured findings during digital pathology review
Ida Cervin, Jesper Molin, Claes Lundstrom
J Pathol Inform 2016, 7:32 (26 July 2016)
DOI:10.4103/2153-3539.186917  PMID:27563491
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Technical Note: NDER: A novel web application using annotated whole slide images for rapid improvements in human pattern recognition
Nicholas P Reder, Daniel Glasser, Suzanne M Dintzis, Mara H Rendi, Rochelle L Garcia, Jonathan C Henriksen, Mark R Kilgore
J Pathol Inform 2016, 7:31 (26 July 2016)
DOI:10.4103/2153-3539.186913  PMID:27563490
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Research Article: Comparing whole slide digital images versus traditional glass slides in the detection of common microscopic features seen in dermatitis
Nikki S Vyas, Michael Markow, Carlos Prieto-Granada, Sudeep Gaudi, Leslie Turner, Paul Rodriguez-Waitkus, Jane L Messina, Drazen M Jukic
J Pathol Inform 2016, 7:30 (26 July 2016)
DOI:10.4103/2153-3539.186909  PMID:27563489
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Original Article: Deep learning for digital pathology image analysis: A comprehensive tutorial with selected use cases Highly accessed article
Andrew Janowczyk, Anant Madabhushi
J Pathol Inform 2016, 7:29 (26 July 2016)
DOI:10.4103/2153-3539.186902  PMID:27563488
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Original Article: Clinically-inspired automatic classification of ovarian carcinoma subtypes
Aicha BenTaieb, Masoud S Nosrati, Hector Li-Chang, David Huntsman, Ghassan Hamarneh
J Pathol Inform 2016, 7:28 (26 July 2016)
DOI:10.4103/2153-3539.186899  PMID:27563487
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Research Article: Pathology informatics essentials for residents: A flexible informatics curriculum linked to accreditation council for graduate medical education milestones
Walter H Henricks, Donald S Karcher, James H Harrison, John H Sinard, Michael W Riben, Philip J Boyer, Sue Plath, Arlene Thompson, Liron Pantanowitz
J Pathol Inform 2016, 7:27 (6 July 2016)
DOI:10.4103/2153-3539.185673  PMID:27563486
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Original Article: Evaluation of panoramic digital images using Panoptiq for frozen section diagnosis
Dinesh Pradhan, Sara E Monaco, Anil V Parwani, Ishtiaque Ahmed, Jon Duboy, Liron Pantanowitz
J Pathol Inform 2016, 7:26 (4 May 2016)
DOI:10.4103/2153-3539.181770  PMID:27217976
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Research Article: Pitfalls in the use of whole slide imaging for the diagnosis of central nervous system tumors: A pilot study in surgical neuropathology
Melike Pekmezci, Sanem Pinar Uysal, Yelda Orhan, Tarik Tihan, Han Sung Lee
J Pathol Inform 2016, 7:25 (4 May 2016)
DOI:10.4103/2153-3539.181769  PMID:27217975
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Technical Note: A real-time dashboard for managing pathology processes Highly accessed article
Fawaz Halwani, Wei Chen Li, Diponkar Banerjee, Lysanne Lessard, Daniel Amyot, Wojtek Michalowski, Randy Giffen
J Pathol Inform 2016, 7:24 (4 May 2016)
DOI:10.4103/2153-3539.181768  PMID:27217974
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Original Article: Digital pathology and anatomic pathology laboratory information system integration to support digital pathology sign-out Highly accessed article
Huazhang Guo, Joe Birsa, Navid Farahani, Douglas J Hartman, Anthony Piccoli, Matthew O'Leary, Jeffrey McHugh, Mark Nyman, Curtis Stratman, Vanja Kvarnstrom, Samuel Yousem, Liron Pantanowitz
J Pathol Inform 2016, 7:23 (4 May 2016)
DOI:10.4103/2153-3539.181767  PMID:27217973
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Original Article: Exploring virtual reality technology and the Oculus Rift for the examination of digital pathology slides Highly accessed article
Navid Farahani, Robert Post, Jon Duboy, Ishtiaque Ahmed, Brian J Kolowitz, Teppituk Krinchai, Sara E Monaco, Jeffrey L Fine, Douglas J Hartman, Liron Pantanowitz
J Pathol Inform 2016, 7:22 (4 May 2016)
DOI:10.4103/2153-3539.181766  PMID:27217972
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Research Article: Removing defocused objects from single focal plane scans of cytological slides
David Friedrich, Alfred Böcking, Dietrich Meyer-Ebrecht, Dorit Merhof
J Pathol Inform 2016, 7:21 (4 May 2016)
DOI:10.4103/2153-3539.181765  PMID:27217971
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Original Article: Validation of break-apart and fusion MYC probes using a digital fluorescence in situ hybridization capture and imaging system
Michael Liew, Leslie Rowe, Parker W Clement, Rodney R Miles, Mohamed E Salama
J Pathol Inform 2016, 7:20 (4 May 2016)
DOI:10.4103/2153-3539.181764  PMID:27217970
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Commentary: Commentary: Has pathology gone to the "birds" because we have just been "winging" it?
Liron Pantanowitz, Eric Glassy
J Pathol Inform 2016, 7:19 (4 May 2016)
DOI:10.4103/2153-3539.181763  PMID:27217969
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