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2022
March
[
1
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January
[
10
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2021
December
[
7
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November
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9
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September
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8
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August
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2
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July
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1
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June
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4
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May
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3
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April
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4
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March
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7
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February
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3
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January
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6
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2020
December
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2
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November
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5
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October
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3
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September
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2
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August
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8
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July
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4
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June
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2
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May
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1
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April
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3
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March
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3
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February
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6
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January
[
1
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2019
December
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6
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November
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4
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September
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4
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August
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3
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July
[
6
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June
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1
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May
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2
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April
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6
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March
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3
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February
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4
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January
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2
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2018
December
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10
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November
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4
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October
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3
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September
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4
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August
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1
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July
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3
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June
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5
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May
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4
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April
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10
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March
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2
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February
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4
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2017
December
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5
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November
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4
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October
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3
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September
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9
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July
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5
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June
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2
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May
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4
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April
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6
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March
[
6
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February
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7
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2016
December
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7
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November
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5
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October
[
3
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September
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7
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August
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1
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July
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7
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May
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8
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April
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7
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March
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4
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February
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2
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January
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5
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2015
November
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4
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October
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5
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September
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5
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August
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4
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July
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3
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June
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19
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May
[
5
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April
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1
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March
[
5
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February
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9
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January
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3
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2014
November
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2
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October
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5
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September
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4
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August
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6
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July
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8
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June
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1
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May
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3
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March
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8
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February
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3
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January
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4
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2013
December
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5
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November
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2
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October
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4
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September
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4
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August
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3
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July
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3
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June
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5
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May
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7
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March
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18
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February
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1
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January
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1
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2012
December
[
6
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November
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1
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October
[
4
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September
[
4
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August
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7
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July
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2
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June
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1
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May
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2
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April
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7
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March
[
6
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February
[
7
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January
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13
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2011
December
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3
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November
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1
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October
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7
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August
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9
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July
[
3
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June
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7
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May
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3
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March
[
6
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February
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8
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January
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6
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2010
December
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4
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November
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1
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October
[
6
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September
[
1
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August
[
6
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July
[
6
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May
[
5
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Research Article:
Isolation and two-step classification of normal white blood cells in peripheral blood smears
Nisha Ramesh, Bryan Dangott, Mohammed E Salama, Tolga Tasdizen
J Pathol Inform
2012, 3:13 (16 March 2012)
DOI
:10.4103/2153-3539.93895
PMID
:22530181
Introduction:
An automated system for differential white blood cell (WBC) counting based on morphology can make manual differential leukocyte counts faster and less tedious for pathologists and laboratory professionals. We present an automated system for isolation and classification of WBCs in manually prepared, Wright stained, peripheral blood smears from whole slide images (WSI).
Methods:
A simple, classification scheme using color information and morphology is proposed. The performance of the algorithm was evaluated by comparing our proposed method with a hematopathologist's visual classification. The isolation algorithm was applied to 1938 subimages of WBCs, 1804 of them were accurately isolated. Then, as the first step of a two-step classification process, WBCs were broadly classified into cells with segmented nuclei and cells with nonsegmented nuclei. The nucleus shape is one of the key factors in deciding how to classify WBCs. Ambiguities associated with connected nuclear lobes are resolved by detecting maximum curvature points and partitioning them using geometric rules. The second step is to define a set of features using the information from the cytoplasm and nuclear regions to classify WBCs using linear discriminant analysis. This two-step classification approach stratifies normal WBC types accurately from a whole slide image.
Results:
System evaluation is performed using a 10-fold cross-validation technique. Confusion matrix of the classifier is presented to evaluate the accuracy for each type of WBC detection. Experiments show that the two-step classification implemented achieves a 93.9% overall accuracy in the five subtype classification.
Conclusion:
Our methodology achieves a semiautomated system for the detection and classification of normal WBCs from scanned WSI. Further studies will be focused on detecting and segmenting abnormal WBCs, comparison of 20× and 40× data, and expanding the applications for bone marrow aspirates.
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Commentary:
Board certification for pathologists in clinical informatics: Are you a lumper or a splitter?
Alexis B Carter
J Pathol Inform
2012, 3:12 (16 March 2012)
DOI
:10.4103/2153-3539.93894
PMID
:22530180
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Original Article:
Clinical fellowship training in pathology informatics: A program description
John R Gilbertson, David S McClintock, Roy E Lee, Maristela Onozato, Frank C Kuo, Bruce A Beckwith, Yukako Yagi, Anand S Dighe, Tom M Gudewicz, Long P Le, David C Wilbur, Ji Yeon Kim, Victor B Brodsky, Stephen Black-Schaffer
J Pathol Inform
2012, 3:11 (16 March 2012)
DOI
:10.4103/2153-3539.93893
PMID
:22530179
Background:
In 2007, our healthcare system established a clinical fellowship program in pathology informatics. In 2011, the program benchmarked its structure and operations against a 2009 white paper "Program requirements for fellowship education in the subspecialty of clinical informatics," endorsed by the Board of the American Medical Informatics Association (AMIA) that described a proposal for a general clinical informatics fellowship program.
Methods:
A group of program faculty members and fellows compared each of the proposed requirements in the white paper with the fellowship program's written charter and operations. The majority of white paper proposals aligned closely with the rules and activities in our program and comparison was straightforward. In some proposals, however, differences in terminology, approach, and philosophy made comparison less direct, and in those cases, the thinking of the group was recorded. After the initial evaluation, the remainder of the faculty reviewed the results and any disagreements were resolved.
Results:
The most important finding of the study was how closely the white paper proposals for a general clinical informatics fellowship program aligned with the reality of our existing pathology informatics fellowship. The program charter and operations of the program were judged to be concordant with the great majority of specific white paper proposals. However, there were some areas of discrepancy and the reasons for the discrepancies are discussed in the manuscript.
Conclusions:
After the comparison, we conclude that the existing pathology informatics fellowship could easily meet all substantive proposals put forth in the 2009 clinical informatics program requirements white paper. There was also agreement on a number of philosophical issues, such as the advantages of multiple fellows, the need for core knowledge and skill sets, and the need to maintain clinical skills during informatics training. However, there were other issues, such as a requirement for a 2-year fellowship and for informatics fellowships to be done after primary board certification, that pathology should consider carefully as it moves toward a subspecialty status and board certification.
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Original Article:
Integration of digital gross pathology images for enterprise-wide access
Milon Amin, Gaurav Sharma, Anil V Parwani, Ralph Anderson, Brian J Kolowitz, Anthony Piccoli, Rasu B Shrestha, Gonzalo Romero Lauro, Liron Pantanowitz
J Pathol Inform
2012, 3:10 (16 March 2012)
DOI
:10.4103/2153-3539.93892
PMID
:22530178
Background:
Sharing digital pathology images for enterprise- wide use into a picture archiving and communication system (PACS) is not yet widely adopted. We share our solution and 3-year experience of transmitting such images to an enterprise image server (EIS).
Methods:
Gross pathology images acquired by prosectors were integrated with clinical cases into the laboratory information system's image management module, and stored in JPEG2000 format on a networked image server. Automated daily searches for cases with gross images were used to compile an ASCII text file that was forwarded to a separate institutional Enterprise Digital Imaging and Communications in Medicine (DICOM) Wrapper (EDW) server. Concurrently, an HL7-based image order for these cases was generated, containing the locations of images and patient data, and forwarded to the EDW, which combined data in these locations to generate images with patient data, as required by DICOM standards. The image and data were then "wrapped" according to DICOM standards, transferred to the PACS servers, and made accessible on an institution-wide basis.
Results:
In total, 26,966 gross images from 9,733 cases were transmitted over the 3-year period from the laboratory information system to the EIS. The average process time for cases with successful automatic uploads (
n
=9,688) to the EIS was 98 seconds. Only 45 cases (0.5%) failed requiring manual intervention. Uploaded images were immediately available to institution- wide PACS users. Since inception, user feedback has been positive.
Conclusions:
Enterprise- wide PACS- based sharing of pathology images is feasible, provides useful services to clinical staff, and utilizes existing information system and telecommunications infrastructure. PACS-shared pathology images, however, require a "DICOM wrapper" for multisystem compatibility.
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Original Article:
Referenceless image quality evaluation for whole slide imaging
Noriaki Hashimoto, Pinky A Bautista, Masahiro Yamaguchi, Nagaaki Ohyama, Yukako Yagi
J Pathol Inform
2012, 3:9 (16 March 2012)
DOI
:10.4103/2153-3539.93891
PMID
:22530177
Objective:
The image quality in whole slide imaging (WSI) is one of the most important issues for the practical use of WSI scanners. In this paper, we proposed an image quality evaluation method for scanned slide images in which no reference image is required.
Methods:
While most of the conventional methods for no-reference evaluation only deal with one image degradation at a time, the proposed method is capable of assessing both blur and noise by using an evaluation index which is calculated using the sharpness and noise information of the images in a given training data set by linear regression analysis. The linear regression coefficients can be determined in two ways depending on the purpose of the evaluation. For objective quality evaluation, the coefficients are determined using a reference image with mean square error as the objective value in the analysis. On the other hand, for subjective quality evaluation, the subjective scores given by human observers are used as the objective values in the analysis. The predictive linear regression models for the objective and subjective image quality evaluations, which were constructed using training images, were then used on test data wherein the calculated objective values are construed as the evaluation indices.
Results:
The results of our experiments confirmed the effectiveness of the proposed image quality evaluation method in both objective and subjective image quality measurements. Finally, we demonstrated the application of the proposed evaluation method to the WSI image quality assessment and automatic rescanning in the WSI scanner.
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Editorial:
Tryggo: Old norse for truth
- The real truth about ground truth: New insights into the challenges of generating ground truth maps for WSI CAD algorithm evaluation
Jason D Hipp, Steven C Smith, Jeffrey Sica, David Lucas, Jennifer A Hipp, Lakshmi P Kunju, Ulysses J Balis
J Pathol Inform
2012, 3:8 (16 March 2012)
DOI
:10.4103/2153-3539.93890
PMID
:22530176
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© Journal of Pathology Informatics | Published by Wolters Kluwer -
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Online since 10
th
March, 2010