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  Indian J Med Microbiol
 

Figure 1: Serial workflow and architecture to download Cancer Genomics Hub data. To obtain next generation sequencing data from Cancer Genomics Hub, the cgDownload utility was used to transfer aligned whole genome and whole exome sequencing data. The SomaticSniper utility was then used to identify somatic variants and tumor clonality was predicted with SciClone. These utilities were all manually configured on a server running CentOS 6.7

Figure 1: Serial workflow and architecture to download Cancer Genomics Hub data. To obtain next generation sequencing data from Cancer Genomics Hub, the cgDownload utility was used to transfer aligned whole genome and whole exome sequencing data. The SomaticSniper utility was then used to identify somatic variants and tumor clonality was predicted with SciClone. These utilities were all manually configured on a server running CentOS 6.7